PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462859219
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family B3
Protein Properties Length: 559aa    MW: 59605.2 Da    PI: 10.1895
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462859219genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3598.2e-19393489295
                EEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEE.TTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EEE CS
         B3   2 fkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltled.esgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelvvk 95 
                +kvl++sdv+++gr+vlpkk ae h  ++k++ ++ + +ed  s+r+W++++++  ++ks++y+l+ ++ +Fv+ n+L+egDf+v++  ++ ++++++++
  462859219 393 QKVLKQSDVGSLGRIVLPKKEAEIHlpELKTRDGISIPMEDiGSSRVWNMRYRFwpNNKSRMYLLE-NTGDFVRYNELQEGDFIVIY--SDvKSGKYLIR 489
                79********************999**999***********7788*******99777777777777.********************..55588877776 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.104.0E-27384499IPR015300DNA-binding pseudobarrel domain
CDDcd100157.99E-33390491No hitNo description
SuperFamilySSF1019363.92E-22391487IPR015300DNA-binding pseudobarrel domain
SMARTSM010191.1E-17392494IPR003340B3 DNA binding domain
PROSITE profilePS5086310.236392494IPR003340B3 DNA binding domain
PfamPF023623.5E-15393488IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009737Biological Processresponse to abscisic acid
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 559 aa     Download sequence    Send to blast
MMIEDAMSAP PHPVSAGGPE GKALLEGGAG GEGACMDAPA AGEDLPRFFM EWLTNNRESI  60
SAEDLRGIRL KRSTIEAAAA RLGGGRQGTM QLLKLILTWV QNHHLQKKRP RDAMEEATAA  120
AGSHGHGQLS SPGVNAGYEF PAGGHDVQAP AGAGTSSWVP YQQPFSPPPA YGAEAVYPSG  180
AAGHGQFTFH QQGCGTSSVV VNSQAFSPPA VGDMHAPAGS WPPQQYVTFA GGASTGSYPM  240
PPPFSPGFAG QYPMGSPRMA AGVEASATKE ARKKRMARQR RLSCLQQQRS QQLSFGQIQS  300
GPLLQQEPSP RSVHSAPVTP SAGSWFWPSA GQQIRNPLSK SNSSAQMLQP AAAPPPPAKT  360
ASAARQEKSP QRAAASDKRQ GTKADKNLRF LLQKVLKQSD VGSLGRIVLP KKEAEIHLPE  420
LKTRDGISIP MEDIGSSRVW NMRYRFWPNN KSRMYLLENT GDFVRYNELQ EGDFIVIYSD  480
VKSGKYLIRG VKVRPAPEHG NGVLGKHKQG HPAERAGASG SEDGGGVDGK PDACKSRPPH  540
SVRRARQEAA AMGQMAVII
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAJ2792001e-144AJ279200.1 Eragrostis tef partial mRNA for transcription factor (vp1 gene).
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004971015.10.0PREDICTED: regulatory protein viviparous-1
SwissprotP263070.0VIV1_MAIZE; Regulatory protein viviparous-1
TrEMBLK3XF300.0K3XF30_SETIT; Uncharacterized protein
STRINGSi000497m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP75293443
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24650.11e-66B3 family protein